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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattgtttttctggttttcgcttgtagtattaattgagaaaatgaataactagatatatccaccttatgcagagcctacccattgtagtaggatcatatttcaccttacattgacttgatgatttcaataattttaaagataagagtaatgttaactgaatagtttccttgacatgactatttaacatattatagGATAAGTATCAGCAAAAGGTTCACTTCTCCCAGCATGGCATTCCACTTCCTGAGTTTATGAAG

Basic information

species Glycine max
transcript GLYMA20G36930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0081g00240.t01 (Vitis vinifera), 3'ss of exon 3
gtgattgtttttctggttttcgcttgtagtattaattgagaaaatgaataactagatatatccaccttatgcagagcctacccattgtagtaggatcatatttcaccttacattgacttgatgatttcaataattttaaagataagagtaatgttaactgaatagtttccttgacatgactatttaacatattatagGATAAGTATCAGCAAAAGGTTCACTTCTCCCAGCATGGCATTCCACTTCCTGAGTTTATGAAG
                                                                                   | |||  |  | | |    | |  || | |  |  | | || || |||| ||     |||| |  |||||| |  || || |||   ||||  ||  | ||   |   ||  ||||||| ||||  ||||| |||||||| || | |||||  ||||||||||||||||||||| ||
----------------------------------------------------------------------------------aaatgttatgtggtta---cttagttttcctcaaaatca-gacttgaatattt-----gatatg--taatgt-atatgcat-gttggattga--tgttttttcctccctttgcagGATAAATATCTCCAAAAAGTTCACTTTTCTCGGCATGCAATTCCACTTCCTGAGTTTATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagagtaatgttaactgaatagtttccttgacatgactatttaacatattatagGATAAGTATCAGCAAAAGGTTCACTTCTCCCAGCATGGCATTCCACTTCCTGAGTTTATGAAG
                                 atgactatttaacata  TA-rich tract