1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattgccatgtattcaagcatctttgaagttcttacatggagttcgttagtctttttggatttggatttttctacaatttaatttgtttgtcatttgcagATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAAGTCTGGAGATATAAAGGTCTTGGCTGTATTCTAACTCATACCATACCAT
species | Glycine max |
transcript | GLYMA20G36800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCCAAAAGAGTGATGGGTCGTTGATCATTTTTTGTACTTTATAAAG ATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAAEST: gi|58015896|gb|CX702638.1|CX702638
genomic: GAAGCCCAAAAGAGTGATGGGTCGTTGATCATTTTTTGTACTTTATAAAGgtttcggaat ... tcatttgcagATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAA
EST: GAAGCCCAAAAGAGTGATGGGTCGTTGATCATTTTTTGTACTTTATAAAG ATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAA
genomic: GAAGCCCAAAAGAGTGATGGGTCGTTGATCATTTTTTGTACTTTATAAAGgtttcggaat ... tcatttgcagATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAA
gttagtctttttggatttggatttttctacaatttaatttgtttgtcatttgcagATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAAGTCTGGAGATATAAAGGTCTTGGCTGTATTCTAACTCATACCATACCAT
atttaat putative branch site (score: 4)
atttttctacaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgccatgtattcaagcatctttgaagttcttacatggagttcgttagtctttttggatttggatttttctacaatttaatttgtttgtcatttgcagATTGCTGGAATAAGATTCATGTGGGAAAATGCAGTCAATCAGAAAAGTGAAGTCTGGAGATATAAAGGTCTTGGCTGTATTCTAACTCATACCATACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - -ccatgta
- - - - - - ttcaagc
- - - - - - - - - - - - - - - - - -catggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg