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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacatatcatgcagtttagttagtacgacccaatgttttgttttggtttggtttggtttttattatttacttttgatcgatgttatatatgttacgtgcatgcagGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTGCATACTCCTATCCGCCCCACGCTGCCATTGCCTCCACCACCTCGTCAGC

Basic information

species Glycine max
transcript GLYMA20G36770.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425417|gb|CA936937.1|CA936937
EST:     TCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACC                         GATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTG
genomic: TCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACCgtatgtacat ... gtgcatgcagGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTG
EST: gi|9565199|gb|BE474708.1|BE474708
EST:     TCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACC                         GATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTG
genomic: TCCATAACAACAACAACTCCTCATCACCCTCTTCCACTGCACCAATCACCgtatgtacat ... gtgcatgcagGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttggtttttattatttacttttgatcgatgttatatatgttacgtgcatgcagGATAGGGATTCTATGCATATGAGGGGTTTATTTTCCGCGTTTGGACAACTGCATACTCCTATCCGCCCCACGCTGCCATTGCCTCCACCACCTCGTCAGC
                    ttttgat  putative branch site (score: 4)
      tttttattatttactt  TA-rich tract