1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAGAAAGTGATTAAGGAGAAGAAGAAAGGAGCCAAGCGTGCTGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtctttacttatctgtctgtgctctgatgacatcttattttcttcagttgataggaagtaacttggttaactctcgccctttttgatatacattag...
species | Glycine max |
transcript | GLYMA20G36600.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAG GCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTEST: gi|193508538|gb|FK465401.1|FK465401
genomic: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtcttt ... tattgtgtagGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGT
EST: GGTCTGCTGTCCCTGTGATAGAAGATTTTCAGGAAGATGAAATGAAAGAG GCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTEST: gi|208100797|gb|GD900046.1|GD900046
genomic: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtcttt ... tattgtgtagGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGT
EST: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAG GCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGTEST: gi|207771132|gb|GD742439.1|GD742439
genomic: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtcttt ... tattgtgtagGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGCAATGGGT
EST: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAG GCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAGACAAATGG
genomic: GGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtcttt ... tattgtgtagGCTGATAAGTTGATAAAGGAAGAGGCCCTGTATCTTTGTGCAG-CAA-TGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAAGTGATTAAGGAGAAGAAGAAAGGAGCCAAGCGTGCTGTAAATGGGTCTGCTGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGAGgtatgtctttacttatctgtctgtgctctgatgacatcttattttcttcagttgataggaagtaacttggttaactctcgccctttttgatatacattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG