1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaatgttagtctgggtagggttagtgaaacagaagagcaattaaataagttgaagtgtgatccttttataaatatctgaaggtttttttggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTATTCAAACCAATAGCAGAATAGCCATTGGAGCTGCCATTTCTCCTGTCT
species | Glycine max |
transcript | GLYMA20G36380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG AGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTEST: gi|17401767|gb|BM178549.1|BM178549
genomic: GTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACGgttagtactt ... ggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
EST: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG AGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTEST: gi|58016541|gb|CX703283.1|CX703283
genomic: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACGgttagtactt ... ggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
EST: GTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG AGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTEST: gi|51342972|gb|CO983705.1|CO983705
genomic: GTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACGgttagtactt ... ggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
EST: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG AGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTEST: gi|17401803|gb|BM178585.1|BM178585
genomic: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACGgttagtactt ... ggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
EST: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG AGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
genomic: CGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACGgttagtactt ... ggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTT
ataagttgaagtgtgatccttttataaatatctgaaggtttttttggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTATTCAAACCAATAGCAGAATAGCCATTGGAGCTGCCATTTCTCCTGTCT
tttttttg CT-rich tract
ttttataaatatctga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatgttagtctgggtagggttagtgaaacagaagagcaattaaataagttgaagtgtgatccttttataaatatctgaaggtttttttggcgatgcagAGTGACTCGTACCGGGCAACCGGATGTTACAACCTTCTTTGTGCTGGCTTTATTCAAACCAATAGCAGAATAGCCATTGGAGCTGCCATTTCTCCTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - -gggtagg
- - - - - - - - - - gttagtg
- - - - - - - - - - - - - -aaacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgtg