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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaattcattatatataagccttgaattgattctagtaattaacttggacaatttgaattaaacgaggcataaatgattgtgtggtgggtgcagGATTTATTACGTCAAAAGTAGCATGTTGCGGTCAAGGACCCTTTAATGGTCTTGGACTATGCACGGTAGTGTCCAACTTATGTCCAAACCGTCACGAATT

Basic information

species Glycine max
transcript GLYMA20G36350.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666490|gb|AW277884.1|AW277884
EST:     CAACACACAACTCATGCACGATGATTTCGTCACTAATCCTCAAGCATATG                         GATTTATTACGTCAAAAGTAGCATGTTGCGGTCAAGGACCCTTTAATGGTC
genomic: CAACACACAACTCATGCACGATGATTTCGTCACTAATCCTCAAGCATATGgtaattaatt ... gtgggtgcagGATTTATTACGTCAAAAGTAGCATGTTGCGGTCAAGGACCCTTTAATGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacttggacaatttgaattaaacgaggcataaatgattgtgtggtgggtgcagGATTTATTACGTCAAAAGTAGCATGTTGCGGTCAAGGACCCTTTAATGGTCTTGGACTATGCACGGTAGTGTCCAACTTATGTCCAAACCGTCACGAATT
 aattaac  putative branch site (score: 2)
         acaatttgaattaaa  TA-rich tract