Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacgttttatattcttactcttgcataaattttggttctagtatattttgagtaaaaaataatcatcataaaactagtttctaagtgatttggttttttaatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAGATTTCTTCTTTCCTGGATTGGGACCCGGAAACACTTCAAACCCCCTAGG

Basic information

species Glycine max
transcript GLYMA20G36320.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204382|gb|BI427150.1|BI427150
EST:     AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
EST: gi|192326747|gb|FK017344.1|FK017344
EST:     AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
EST: gi|254341474|gb|GR850687.1|GR850687
EST:     AAG-CCCCTGC-AGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
EST: gi|254336759|gb|GR842938.1|GR842938
EST:     AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
EST: gi|254341473|gb|GR850686.1|GR850686
EST:     AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
EST: gi|254326060|gb|GR840652.1|GR840652
EST:     AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTG                         TGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG
genomic: AAGCCCCCTGCAAGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGgtatatacgt ... taatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaataatcatcataaaactagtttctaagtgatttggttttttaatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCAAAGCTTGCTAAGGCTGAAGATTTCTTCTTTCCTGGATTGGGACCCGGAAACACTTCAAACCCCCTAGG
                                          ttttaat  putative branch site (score: 3)
                                        tttttt  CT-rich tract
     ataatcatcataaaa  TA-rich tract