Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254340196|gb|GR858321.1|GR858321EST: AGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGGTCTATATGGAG TGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
genomic: AGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGGTCTATATGGAGgtatatttca ... ttatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
EST:
gi|254340114|gb|GR858239.1|GR858239EST: AGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGGTCTATATGGAG TGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
genomic: AGACTTTTGTGTGGCTATCAATGATACCAAAACTGGTGGTCTATATGGAGgtatatttca ... ttatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
EST:
gi|254340197|gb|GR858322.1|GR858322EST: TATCAATGATACCAAAACTGGTGGTCTATATGGAG TGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
genomic: TATCAATGATACCAAAACTGGTGGTCTATATGGAGgtatatttca ... ttatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatattttgtgtcaagaataatcatcataaagtttgtttgtgattttatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATGATTTCTTCTTTGGTGGATTGGGACCCGGAAACACTGCAAACCCACAAGG
aataatcatcataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatttcatatattcataaattttgtaggtacaatattttgtgtcaagaataatcatcataaagtttgtttgtgattttatgtgcagTGTTCGTGAATGGAAAATTTTGCAAGGATCCTAAGTTTGCTTATGCTGATGATTTCTTCTTTGGTGGATTGGGACCCGGAAACACTGCAAACCCACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA