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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaatggttgggagttttttttgtttgttttttttctctggtaggttggtatcatataattgtaatatgcttcttattatattttttttattgactatagTTCAGATGGAATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTTTATTGCATCGCCTTGCTGAGATATTTGG

Basic information

species Glycine max
transcript GLYMA20G36190.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701936|gb|BW670526.1|BW670526
EST:     CTCACAATGGAAGAAGCACTGGTTAACTTTCTTCAGGATGATGACACTAG                         TTCAGATGGAATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTTT
genomic: CTCACAATGGAAGAAGCACTGGTTAACTTTCTTCAGGATGATGACACTAGgtaacattta ... ttgactatagTTCAGATGGAATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtatcatataattgtaatatgcttcttattatattttttttattgactatagTTCAGATGGAATCTTGGAATTGGAGCCAATGAACTCTTACAACCGTCTTTTATTGCATCGCCTTGCTGAGATATTTGG
                                           tattgac  putative branch site (score: 2)
                                    ttttttttatt  CT-rich tract
        atataattgtaatatg  TA-rich tract