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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGGTTGAGGAAAAAGACGGAGGGCGGGCATGGATTCAGATGATGGACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgccttacctttcattcttcccttttgcagtttgttagaattgagtgagtgagggtgtatgcttgttagagtggaccgccgcag

Basic information

species Glycine max
transcript GLYMA20G36050.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G36050.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0025g02820.t01 (Vitis vinifera), 5'ss of exon 2
GAAGTTGGTTGAGGAAAAAGACGGAGGGCGGGCATGGATTCAGATGATGGACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgccttacctttcat----tcttcccttttgcagtttgttagaattgagtgagtgagggtgtatgctt--gttagagtggaccgccgcag--------------------------------------------------------------------------------------
  |  | || ||||  ||||| ||||| |  |||||||||||||||||||| || ||||| || ||||||| |||| |||| ||| | || |||||||| ||| || ||   | || |    | ||| |||  ||| || ||   |   || | | |||    | |  |    |||||     |                                                                                               
CCAACTTGTAGAGGTGAAAGATGGAGGTCCCGCATGGATTCAGATGATGGATCGCTCTACTCCAACCATGAGCTATAAAGCATGGAGGAGAGATCCTGATgtaggctttctttctcttagtattttctcttaggcatttggtggaataagaataaatgaattagcacccagaagttagcacatatgattcttccttctagggcttgctctattttatacaaatagttaaatttcatatcttgtgcgattgattgagttaaattctgttgggtttgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727482|gb|BW669884.1|BW669884
EST:     ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAG                         TACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCTGAGTTGGTGAGGGAT
genomic: ACCGTTCTACCCCGACCATGACCTATCAAGCGTGGCGTAGGGATCCTGAGgtacgcctta ... accgccgcagTACCGGAGCAGAACGGTGTTCGAAGACGCGAGTCCTGAGTTGGTGAGGGAT