Sequence
atgc intronic sequence ATGC exonic sequenceGGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcagctgcag
Basic information
species | Glycine max |
transcript | GLYMA20G35770.3 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35770.3 (Glycine max), 5'ss of exon 14
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 5'ss of exon 12
GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcagctgcag
|| || | ||| | | ||||||| || || || ||| |||||||| ||| | |||||| |||||||||||||||| || |||||||||||||| | |||| | ||| | | | | ||| | | | | | ||||| | | |||
CAAAATCCATCATATGGGTCTGCGTTTGATGACCCAAGCTCCTCAAATTCTCCTCTTTTGTCCCCAGTTTTTGAAGAACCTTCTTCCTCCTTTTCTGAGGgtaatga--------ttaacaatactaattccattatggtctttc-acttgtctcaatattttgaaccactgttgacag--------
upper sequence: GLYMA20G35770.3 (Glycine max), 5'ss of exon 14
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 5'ss of exon 13
---GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagct--ttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcagctgcag---
| || | ||||| | ||| |||||||| || ||||| ||| ||| ||| | |||||||||||||| || ||||| ||||||||||||||||| | | | | | | ||| || | | | | | || || | || ||| || ||| | | |
TTGGAAAATTCGACTTATGTGGC---TGTCGATGATCCAAGCCCTTCAAATTATCCGATTTTGGCCCCAGTTCTTGAAGAGCCATCTTCATCATTTTCTGAGGgtaatggtttaataacaatgatagtgacattataacaattccatcaccgtctttcactttgttttaaat--attgtgaattacttttggcag
upper sequence: GLYMA20G35770.3 (Glycine max), 5'ss of exon 14
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 12
---GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcacctt---ttaagcttta-caatacattcagagccttgctgt----tggccattccaaattgaataaatcatgatgcagctgcag
|| | | ||||||| || || | |||| |||||||| | |||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||| | ||||| | || | ||||| || ||| | || | | |||| ||| || ||| |||| || || |||||
TCGGGAAGCTCTCCTTACACGGCCCCACTTGAGGATCCCAGCT---CATATTCTCCTTATTTACCACCAGTTCTTGAAGAGCCTTCTTCATCTTTTTCTGAAGgtgaaaaatcatttaacattgaactttagttgtagatttaagaattttttttgacttggctattgcacattaaatacatttcaat----ttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17963067|gb|BM269820.1|BM269820EST: TCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGG ATGAAGATCCATTGCCGGCTATAGAGGGTCTTCAAATTTCAGGAGAAGCCT
genomic: TCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatc ... gcagctgcagATGAAGATCCATTGCCGGCTATAGAGGGTCTTCAAATTTCAGGAGAAGCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAACCCTCCTTATACAACCACTGTTGATGATCCCAGTTCTTCATATTCTCCTTATTTACCACCAGTTCTTGAAGAACCTTCTTCTTCATTTTCTGAGGgtaagtaatcaccttttaagctttacaatacattcagagccttgctgttggccattccaaattgaataaatcatgatgcagctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC