Sequence
atgc intronic sequence ATGC exonic sequencegtatgttgggcatatatttgagtgctttgtattcctgtatgccctgttatggtttggtttgtagataattcaatcgaattagttcttaagtttagttggatgagatagtagatattgttgaaagtttgcaatgtttacttttcgtttttgctataggaattgatctattggtttgtatttgttctttgttacagTCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATGAACCATGCTAATGTTGCCACACAATCACAACCTCACTCGATTGGTGCAC
Basic information
species | Glycine max |
transcript | GLYMA20G35770.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35770.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 9
gtatgttgggcatatatttgagtgctttgtattcctgtatgccctgttatggtttggtttgtagataattcaatcgaattagttcttaagtttagttggatgagatagtagatattgttgaaagtttgcaatgtttacttttcgtttttgctataggaattgatctattggtttgtatttgttcttt-----gttacagTCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATGAACCATGCTAATGTTGCCACACAATCACAACCTCACTCGATTGGTGCAC
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---------------------gtatgttatgtaaatggacttcacaatttgttgcagttttctgattttgatctgtaattaagtaacaaagtcaactggg-gatttgatagtttgagatgccttggagcaaagcttttttcccgaattg--tattgggattgtcctaattttctgtttttttcctttctctggtcatagACAAAGCTAAAGGAGTCTCAATTTCAATTGGCACCATGGCGTTCTGATGTGAACCACTCAAACTTTTCTCCACAGTCACCACCTCATTCTATTGGTGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8670390|gb|BE191497.1|BE191497EST: GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAG TCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATG
genomic: GTTTTGTTTAAACATTTACAGGAAAAACTTCTTCTCACTGAGgtatgttggg ... tttgttacagTCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcgtttttgctataggaattgatctattggtttgtatttgttctttgttacagTCAAAGCTAAAGGAGTCACAATATCAATTGACACCTTGGCGTTCAGATATGAACCATGCTAATGTTGCCACACAATCACAACCTCACTCGATTGGTGCAC
aattgat putative branch site (score: 4)
tttgttcttt putative PPT
tttgtattt TA-rich tract