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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactagttgttttgttcttaatctccctttcttagacaacatttacttaagagtttgcattttgattccatatgtagATCATTAGGGAACCAGCTAATGCTCCAGGGGCCTTAGATGCATTTGTTTCCATTGTAACGGGCCCGCCGGGGCCCAATCCGGTGTTGTTGATGCCAAAAA

Basic information

species Glycine max
transcript GLYMA20G35660.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343448|gb|CO984181.1|CO984181
EST:     TGAGTTCAGTGTATGGAAACAAGGAGTCTGTGGATGAAGAACTGGTGGAG                         ATCATTAGGGAACCAGCTAATGCTCCAGGGGCCTTAGATGCATTTGTTTCC
genomic: TGAGTTCAGTGTATGGAAACAAGGAGTCTGTGGATGAAGAACTGGTGGAGgtactagttg ... ccatatgtagATCATTAGGGAACCAGCTAATGCTCCAGGGGCCTTAGATGCATTTGTTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctttcttagacaacatttacttaagagtttgcattttgattccatatgtagATCATTAGGGAACCAGCTAATGCTCCAGGGGCCTTAGATGCATTTGTTTCCATTGTAACGGGCCCGCCGGGGCCCAATCCGGTGTTGTTGATGCCAAAAA
                                     ttttgat  putative branch site (score: 4)
                  atttacttaa  TA-rich tract