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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaatatatattaatgtccatttgctgatttgatttggaaaataatattgcaatcgtagagacattattgttagtttttttttttttttactttttgatattcttgaattgcagTGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAGTGTAAAGATTCTATTTCAAGCAAAGGCAACAAAGGAAAAGTGATTATCA

Basic information

species Glycine max
transcript GLYMA20G35620.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173992|gb|HO017328.1|HO017328
EST:     GTGGTGACATGTTCAACTCTTTCCCTCAAACTGATGCAGTTCTACTAAAG                         TGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAG
genomic: GTGGTGATATGTTCAACTCTTTCCCTCAAACTGATGCAGTTCTACTAAAGgtacaaatat ... tgaattgcagTGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacattattgttagtttttttttttttttactttttgatattcttgaattgcagTGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAGTGTAAAGATTCTATTTCAAGCAAAGGCAACAAAGGAAAAGTGATTATCA
                                 ttttgat  putative branch site (score: 4)
               ttttttttttttttta  CT-rich tract
     ttattgttagtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaatatatattaatgtccatttgctgatttgatttggaaaataatattgcaatcgtagagacattattgttagtttttttttttttttactttttgatattcttgaattgcagTGGGTTTTACATAATTGGAATGACGAAAATTGCATAAAGATCCTGAAAAAGTGTAAAGATTCTATTTCAAGCAAAGGCAACAAAGGAAAAGTGATTATCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA