Sequence
atgc intronic sequence ATGC exonic sequenceGCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatttttcagcatcttgcagtattctttcttcctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag
Basic information
species | Glycine max |
transcript | GLYMA20G35550.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35550.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g10640.1 (Oryza sativa), 5'ss of exon 5
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatt--tttcagcatcttgcagtattctttcttc---ctcaaagtacttttgtagactggct--catgtttcaataaattcttgcaaatt-gggtag
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GCCTGGGGTTGGCAAGACTACTGTTATGCGTGAGATTGCACGTGTTCTAGCAGATGAATTTCAGAAAAGAGTGgta-actaatcgatgttacaatcttgcagactttcttactcatgttcactttcttcatatttaattccttacatgttctatcggtgtattgatgtttagggcag
upper sequence: GLYMA20G35550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G162800_T01 (Zea mays), 5'ss of exon 5
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatt--tttcagcatcttgcagtattctttcttc--ctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag
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GCCTGGGGTCGGCAAGACTACTGTTATGCGTGAGATTGCGCGTGTTTTAGCAGATGAATTTCAGAAAAGAGTGgtatggtaaacaatgctactttcttatacctttctattttcagttcaatgtatttcttgtatcttatatatattcttttgg-tactgatgtttagggcag
upper sequence: GLYMA20G35550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G162800_T03 (Zea mays), 5'ss of exon 5
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatt--tttcagcatcttgcagtattctttcttc--ctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag
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GCCTGGGGTCGGCAAGACTACTGTTATGCGTGAGATTGCGCGTGTTTTAGCAGATGAATTTCAGAAAAGAGTGgtatggtaaacaatgctactttcttatacctttctattttcagttcaatgtatttcttgtatcttatatatattcttttgg--tactgatgtttag----
upper sequence: GLYMA20G35550.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G33290.2 (Arabidopsis thaliana), 5'ss of exon 5
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatttttcagcatcttgcagtattctttcttcctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag
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GCCTGGTGTTGGTAAGACCACTGTTTTGCGAGAGATTGCTCGTGTCTTGTCTGATGAATTCCAGAAAAGAGTGgtg----agtcttgcctatccttcaagttttcttagcctttaggtgctctgcttttaactgg-ttatgtatgtgtaatttgctgtttttag-----
upper sequence: GLYMA20G35550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0089g01190.t01 (Vitis vinifera), 5'ss of exon 5
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatttttcagcatcttgcagtattctttcttcctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag-------------------
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GCCTGGAGTTGGTAAGACCACTGTTATGAGAGAGATTGCACGGGTCTTGTCCGATGAGCTTAACAGAAGAGTGgtatgttgagtttcttgt-tatcacatcttcatctgtgtctctcactcatatgttcatcttccttaagtgtcgtgagttgtctacaatgaagttattttaacaattggtggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51338386|gb|CO982252.1|CO982252EST: TTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTG GTGATTGTTGATACCAGCAATGAAATTGGAGGTGATGGCAATATTCCACAT
genomic: TTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaat ... aattgggtagGTGATTGTTGATACCAGCAATGAAATTGGAGGTGATGGCAATATTCCACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTGGGGTTGGCAAAACTACTGTTATGCGAGAGATTGCTCGTGTACTGTCTGATGAGCTTCACAAAAGAGTGgtatgccaatttttcagcatcttgcagtattctttcttcctcaaagtacttttgtagactggctcatgtttcaataaattcttgcaaattgggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT