1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtcattattatattgactatacatgtttgttttttaatttcattattgttgtgcagtgtgcttacttgtatttgtgattttcttatggccttatctcagGATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACTCTTCGTCAAC
species | Glycine max |
transcript | GLYMA20G35480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGGTGCCAATTTCGCACCACATGTGCTCACAGTAAATGCTGGCGAG GATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATA
genomic: CAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCTGGCGAGgtattctgct ... cttatctcagGATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATA
attgttgtgcagtgtgcttacttgtatttgtgattttcttatggccttatctcagGATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACTCTTCGTCAAC
tgcttac putative branch site (score: 2)
ccttatctc putative PPT
attttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcattattatattgactatacatgtttgttttttaatttcattattgttgtgcagtgtgcttacttgtatttgtgattttcttatggccttatctcagGATGTCACTATGAAAATTATGACCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACTCTTCGTCAAC
- - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac