1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaatattatcacatatgtaggtttctacatatgggtgcttatgtgtgagcatccattttatgatggtgagaagcttaactaaaaatcttgtactttcagGTAGAGAAACCGAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA
species | Glycine max |
transcript | GLYMA20G35460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gtgagcatccattttatgatggtgagaagcttaactaaaaatcttgtactttcagGTAGAGAAACCGAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA
aactaaa putative branch site (score: 2)
tactttc putative PPT
ttaactaaaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatattatcacatatgtaggtttctacatatgggtgcttatgtgtgagcatccattttatgatggtgagaagcttaactaaaaatcttgtactttcagGTAGAGAAACCGAAGAATCGGGGAAATCGTAACATGCAACGATATTATTTTAGGTCCACTTCTGTTATGATTGTCAGGATATGGTCCTCGTGGCTTGTCA
- - - - - - - tatgtag
- - - - - - - - - - - - - - - - tgggtgc
- - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg