Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAAAACAAAAATTGAAAATTCCAAGTTGGGGTTCTCACGATTTCGATTCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctttgcgttcttcatgtttttttttgcacgttttatcgatctgctaacttgacatttgatccaacgcaagttcgttgcttttttgattgaaaatcagattttgagataccctttgtgttcccaattaatgggttttttctggtgattgtatgggtgttaatttag

Basic information

species Glycine max
transcript GLYMA20G35430.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173714|gb|HO017050.1|HO017050
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         AAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttaatttagAAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
EST: gi|37996133|gb|CF807722.1|CF807722
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         AAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttaatttagAAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
EST: gi|192330894|gb|FK021639.1|FK021639
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         AAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttaatttagAAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
EST: gi|192330253|gb|FK020553.1|FK020553
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         AAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttaatttagAAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
EST: gi|298182623|gb|HO031358.1|HO031358
EST:     TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAG                         AAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT
genomic: TCACCCTTTCTCCCACACACTCCGATTCTCCTTGTAAACAGCGGTGCCAGgttcgatctt ... gttaatttagAAGTTGATATAGGATGGGGGCAATGATGTCGAGATTCTGGTTCATGTTATT