Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcctttttcttttatttttccccaatttttctggatatatcacagtcgatttgttttttagttaattgtggagaagtgaatgttgtggttttgattgattcagGTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTGATATCGATTTTCGATCGGAGTTCGAGATAGCTCGATCGACGGGAACCTA

Basic information

species Glycine max
transcript GLYMA20G35390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35390.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G14620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtactcctttttcttttatttttccccaatttttctggatatatcacagtcgatttgttttttagttaattgtggagaagtgaatgttgtggttttgattgattcagGTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTGATATCGATTTTCGATCGGAGTTCGAGATAGCTCGATCGACGGGAACCTA
|||     |  |     | |||| |    | ||  |  |  | | |   | |  |  |||||    ||||||  | |   | | |||||  | |||      ||||||||| ||||| || || |||||| ||||| | || |||||||||||||| || || |||||| |||||||||| ||||| ||  |   |||| |    ||
gtataatctccttaaccagtttttcttcttcttcttctacctttgatttttg--tgatttttcgtgtaattgaagtgtttttattgttgatgattt------ttcagGTGAGTATGAGTATATAGATGTGATTGTGAACGGAGAGAGGTTGATAATCGACATTGATTTTAGATCGGAGTTTGAGATCGCAAGGCAGACGAGTGGTTA

upper sequence: GLYMA20G35390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g04500.t01 (Vitis vinifera), 3'ss of exon 2
gtactcctttttcttttatttttccccaatttttctggatatatcacagtcgatttgttttttagttaattgtggagaagtgaatgttgtggttttgattgattcagGTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTGATATCGATTTTCGATCGGAGTTCGAGATAGCTCGATCGACGGGAACCTA
           |  |  ||  ||| |   ||| | | | ||||||     | | |  || |    |||  | |  | || | | |||| | |||||  ||| |||||| |||||||||| ||| |||||| | ||||| || ||||| ||| | || || || |||||  |||| |||||||||||||||||||| || ||    ||
----------gtactccatcgttctc---tttctttagctatatcta---caaataattat---attatgtttccaaaaataattgttcttgttttttttgtttcagGAGAATATGAATTCATAGATGTGATCGTGGATGGGGAGAGATTGCTGATCGACATTGATTTCAGATCAGAGTTCGAGATAGCTCGATCCACTGGGGTTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26269608|gb|CA820671.1|CA820671
EST:     TTCTTCCATTTGCACATCGAAATGGGACAAAACCCCAACCTACCCTGCCG                         GTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTG
genomic: TTCTTCCATTTGCACATCGAAATGGGACAAAACCCCAACCTACCCTGCCGgtactccttt ... attgattcagGTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttttttagttaattgtggagaagtgaatgttgtggttttgattgattcagGTGAATATGAATACATCGATGTGGTTGTGGAAGGTGAGAGGTTGATAATTGATATCGATTTTCGATCGGAGTTCGAGATAGCTCGATCGACGGGAACCTA
                                            gattgat  putative branch site (score: 4)
     ttttttagttaattgt  TA-rich tract