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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTAGAAgtgaatatggattctgctgctattgtctggccatgatttaacag

Basic information

species Glycine max
transcript GLYMA20G35290.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35290.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G43710.1 (Arabidopsis thaliana), 5'ss of exon 11
GTATGTAGAAgtgaatatggattctgctgctattgtctggccatgatttaacag-------------------------------------------------------------------------------------------------------------------------
|||||||||||| ||||||||||| || |||||||||||||||  |||||||||                                                                                                                         
GTATGTAGAAGTCAATATGGATTCCGCAGCTATTGTCTGGCCAGTATTTAACAGCCTTCAAGCTTTCTGGCCAGGACTTCAGgtaaatagtgattctacgtttgaccaaattgttaatatatttcaggctggaaaatttaactatgattttgtatctatgtttctctctcaaaag

upper sequence: GLYMA20G35290.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 12
GTATGTAGAAgtgaatatggattctgctgctattgtctggccatgatttaacag-----------------------------------------------------------------------------------------------------
|||||| || || || |||||||||||||||||||| ||||||| |||||||||                                                                                                     
GTATGTGGAGGTAAACATGGATTCTGCTGCTATTGTTTGGCCATTATTTAACAGTTTGCAAGCATTCTGGCCAGGCCTTCAGgtattttatctattatttatatattataaattttgcattgtcgattaatcaaaaccgattatcactttggaag