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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgtgttatttacttagataggtttacttgaactctgaatttgctatactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAAGTAAGTAGCTAGCAATTTACTGATAATATATCAATTGGT

Basic information

species Glycine max
transcript GLYMA20G35260.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35260.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 3'ss of exon 7
----------------------------------------------------------ctgtgttatttacttagataggtttacttgaactctgaatttgctatactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAAGTAAGTAGCTAGCAATTTACTGATAATATATCAATTGGT
                                                          ||  |   |||  ||| |       |       |   ||||     ||||  |   ||| ||  ||  || | |   ||| | |    |    ||| | |||| |||||||||||||||| || |||||||| |||||||| ||                                        
gtaagttgaggcagctaagtcgaatttacaatatcaaaatgggctagcaaaacatggcctaaggcttttgtttacaacacaacatc---gttgaaaattaatagtactctaggctttcaccctttgctgactgtatttgtctgctatactgtttca-gCTGAGAGAGTACATTGATGACACAGAAGATTACATTAATATCCAG---------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactagatagttttacttttacctaattacttttctttttcttttcatttaaagCTGCGAGAGTACATTGATGATACTGAAGATTATATTAATATTCAAGTAAGTAGCTAGCAATTTACTGATAATATATCAATTGGT
                     acctaat  putative branch site (score: 3)
           ttttacttttacctaa  CT-rich tract
                        taattacttttctttt  TA-rich tract