1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatttttgcacatcacaaagggaagggtgaagacagtgctctgaaggcttcatgtcatagcagcagaaatagtgtgtgtgtgtgtgtctttaactgatagACATTGGTTTGGTTGTGATTTGGTATCTGTTACTTTAATCATTCTTCTTTTCAAGCTCCTTACTATCTTAAAGATGAACACTATAGAAAGTAACTACACT
species | Glycine max |
transcript | GLYMA20G35130.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
ggcttcatgtcatagcagcagaaatagtgtgtgtgtgtgtgtctttaactgatagACATTGGTTTGGTTGTGATTTGGTATCTGTTACTTTAATCATTCTTCTTTTCAAGCTCCTTACTATCTTAAAGATGAACACTATAGAAAGTAACTACACT
ctttaac putative branch site (score: 3)
tgtcttt CT-rich tract
agaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttttgcacatcacaaagggaagggtgaagacagtgctctgaaggcttcatgtcatagcagcagaaatagtgtgtgtgtgtgtgtctttaactgatagACATTGGTTTGGTTGTGATTTGGTATCTGTTACTTTAATCATTCTTCTTTTCAAGCTCCTTACTATCTTAAAGATGAACACTATAGAAAGTAACTACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - cacatca
- - - - - - - - - - ggaaggg
- - - - - - - - - - - - - - - - - - - ctctgaa
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg