1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCTTACCCACACCATATCATATGCCACAAAAGTCTTGCCACCTTAATCACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacaccccaccaccaccttaaaacattaactcaccccttctttacgaggaacactgctgctccactgtcacaaacgcacgcacataacacaattc...
species | Glycine max |
transcript | GLYMA20G35120.4 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAG GTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCTEST: gi|208189086|gb|GD985590.1|GD985590
genomic: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
EST: CCACACTGCTGCAACTCTTGCAAACTCTTTTAG GTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTG-TTGTCATTGTTTCTEST: gi|213597851|gb|DB962204.1|DB962204
genomic: CCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
EST: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAG GTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCTEST: gi|209726426|gb|BW662803.1|BW662803
genomic: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
EST: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAG GTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCTEST: gi|213589513|gb|DB965785.1|DB965785
genomic: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
EST: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAG GTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
genomic: ACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacac ... ttgtttgcagGTTAATCATTTAGTCACTGTATTGTGAGGAAGCTTGTTTGTCATTGTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTTACCCACACCATATCATATGCCACAAAAGTCTTGCCACCTTAATCACAGGTCAATTTGCTGTCCACACTGCTGCAACTCTTGCAAACTCTTTTAGgttggaacaccccaccaccaccttaaaacattaactcaccccttctttacgaggaacactgctgctccactgtcacaaacgcacgcacataacacaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc