Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgtatagtataatctacctttattttcattgaagttaaaaaaaaaactatgcttctgatctttcacatatgttacaaaaattgttagataatttgcaactttgcaaattttcttcttcttttgtatag
Basic information
species | Glycine max |
transcript | GLYMA20G35110.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G14350.3 (Arabidopsis thaliana), 5'ss of exon 3
TGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgta------------tag--tataatctac--ctttattttc----------attgaagttaaaaaaaaaactatgcttctgatctttcacatatgttacaaaaa-ttgttagataatttgcaactttgcaaattttcttcttcttttgtatag-----------------------------
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GGAGATGAAGGAAACTGAATATATGCGCCGTCAGAGGCATAAAATGGGAGCTGATGACTTTGAGCCATTGACAATGATTGGGAAGGGTGCATTCGGAGAGgtaacatctcttttatagatcatagtctgttactctgttttctcagcctctcattggcatgcatcatcttgaaatgttctctgtgatgcatccttcttgaaaggtcttcttaggccattttttttaccacagctaatttttcaaaaaagtatggcatgctaatttttctctttctctttgcag
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G23310.1 (Arabidopsis thaliana), 5'ss of exon 3
TGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgtatagtataatctacctttattttcattgaagttaaaaaaaaaactatgcttctgatctttcacatatgttacaaaaattgttagataatttgcaactttgcaaattttcttcttcttttgtatag-
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AGAGAAGAAGGAAACTGAATACATGCGCCGTCAGAGACATAAAATGGGAACTGATGACTTCGAGCCATTGACAATGATAGGAAAGGGGGCTTTTGGAGAGg------------tagcattagttttattg-----------taaacttttcctgtttcttttca-gcttttcattggtgtgcatatctacacatcatctt----gatcgtcctgtcctgtgatgtaga
upper sequence: GLYMA20G35110.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0049g01220.t01 (Vitis vinifera), 5'ss of exon 2
TGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgtatagtataatctacctttattttcattgaagttaaaaaaaaaactatgcttctgatctttcacatatgttacaaaaattgttagataatttgcaactttgcaaattttcttcttcttttgtatag
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GGAGAAGAAGGAAACAGAATATATGCGCCTCCAGAGGCATAAAATGGGTGCGGATGATTTTGAGCCATTGACAATGATAGGAAAAGGTGCATTTGGGGAGgtatga------ctttcttgctttatactgga-tta----------tatttttcctgcattttgga---gccctccaggttattacatgcttcatctatctgaaaatctttactgaaatt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193327700|gb|FK296367.1|FK296367EST: TGATGATTTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAG GTCAGAGTCTGCCGAGAGAAAGCAACCGGTCATGTATATGCTATGAAGAAA
genomic: TGATGA-TTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgtatagtata ... ttttgtatagGTCAGAGTCTGCCGAGAGAAAGCAACCGGTCATGTATATGCTATGAAGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAAAAAGGAGAGGGAATACATGCGCCTTAAGAGGCATAAAATGGGGGCTGATGATTTTGAGCCCCTGACTATGATAGGGAAGGGTGCATTTGGAGAGgtatagtataatctacctttattttcattgaagttaaaaaaaaaactatgcttctgatctttcacatatgttacaaaaattgttagataatttgcaactttgcaaattttcttcttcttttgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA