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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttccctcatccaatttattggaaaacttggatacattgaaataccatatatgtagaaaactgagcttggcatatttttttcattttaatttatcatttctacagGTTCTGCTAGTAGACTTTTTTATGGCTGACCAACTAACTAGCCAG

Basic information

species Glycine max
transcript GLYMA20G34930.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349236|gb|BI974831.1|BI974831
EST:     ACTGCTTCATCCGTGTTATTTGCAACATAGTATGCTCTCCCTTTTATAAG                         GGTCTGCTAGTAAAACTTTTT-ATGGCTGACCAACTAACTAGCCAG
genomic: ACTGCTTCATCCGTGTTATTTGCAACATAGTATGCTCTCCCTTTTATAAGgtaaacttcc ... atttctacagGTTCTGCTAGTAGA-CTTTTTTATGGCTGACCAACTAACTAGCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtagaaaactgagcttggcatatttttttcattttaatttatcatttctacagGTTCTGCTAGTAGACTTTTTTATGGCTGACCAACTAACTAGCCAG
                                 ttttaat  putative branch site (score: 3)
                                           tcatttct  putative PPT
                     atatttttttcatttt  TA-rich tract