1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTGGCCTATAGTTGGTTGGGTGAATTACCAGTATATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctacatctttcaacttgctatttattactcttccatgattagttcatgtcatctctcattggttctaaaattaatgaataagcatcatcagttga...
species | Glycine max |
transcript | GLYMA20G34920.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGCCTCTGCAGCTC-GTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCA-TCTTTCEST: gi|31470211|gb|CD412359.1|CD412359
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTC
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTAEST: gi|23735013|gb|BU765769.1|BU765769
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTA
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTEST: gi|254316036|gb|GR825845.1|GR825845
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATT
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTAEST: gi|192311021|gb|FK004724.1|FK004724
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTA
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGA-TCTGAA-GCAAGGTCTGTTGTAATTA-GGCTTCCTAEST: gi|254323831|gb|GR840364.1|GR840364
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTA
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTAEST: gi|254316037|gb|GR825846.1|GR825846
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTA
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTAEST: gi|254321581|gb|GR824898.1|GR824898
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAGGCTTCCTA
EST: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTG GGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAAAGGCTTCCT
genomic: ATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctaca ... ctttcgtcagGGCAATCTTTCTGAATCTGAAAGCAAGGTCTGTTGCAATTAA-GGCTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGCCTATAGTTGGTTGGGTGAATTACCAGTATATGCCTCTGCAGCTCCGTGTTGTATTTCACAGCTCTGTTGCTGCTTGCTGgtgagctacatctttcaacttgctatttattactcttccatgattagttcatgtcatctctcattggttctaaaattaatgaataagcatcatcagttga
- - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc