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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATCATCTTTCTCTCTCCGCCGCATGCGGCGGTGACGTTTGATACCCTTCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctcttccccaacccttaaccacatcttttcgcccaatttttaattattgttattattattattattttttaatttgttaccgttgtcactttcattatctaatagatttttcttttgattgcatgttggaacctttag

Basic information

species Glycine max
transcript GLYMA20G34910.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058969|gb|CA801883.1|CA801883
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST: gi|192317649|gb|FK009017.1|FK009017
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST: gi|10844179|gb|BF067506.1|BF067506
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST: gi|7028518|gb|AW458301.1|AW458301
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST: gi|58014910|gb|CX701652.1|CX701652
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST: gi|213617850|gb|DB957359.1|DB957359
EST:     TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG                         CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA