1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatttttttaatacataggataggacaactttttggacaatggttatgcatacaatttaaactgtcaaattaattcgtgggggttgtttgatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTCAATGCTTTGTAAAGGATGTGACAAAATGTGCCAAAGCCTCCACACTAC
species | Glycine max |
transcript | GLYMA20G34870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|213605074|gb|DB956393.1|DB956393
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: -CCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|9987089|gb|BE661197.1|BE661197
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|209720754|gb|BW677544.1|BW677544
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: -CCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|213592616|gb|DB961876.1|DB961876
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|209698379|gb|BW667174.1|BW667174
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|9987090|gb|BE661198.1|BE661198
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTEST: gi|207764274|gb|GD735303.1|GD735303
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
EST: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCG GGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
genomic: TCCTTGGCCGCTATTGGACTTTTGTCATAGCCTCCACCATTTATCTCTCGgttagtctct ... gatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCT
tatgcatacaatttaaactgtcaaattaattcgtgggggttgtttgatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTCAATGCTTTGTAAAGGATGTGACAAAATGTGCCAAAGCCTCCACACTAC
aatttaaactgtcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatttttttaatacataggataggacaactttttggacaatggttatgcatacaatttaaactgtcaaattaattcgtgggggttgtttgatggcgcagGGTATGTCTCTGCTTACACTGGCAGTGTCCCTTCCTAGCCTGAAGCCACCTCAATGCTTTGTAAAGGATGTGACAAAATGTGCCAAAGCCTCCACACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggggg