1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAATgtatcctcttaaaaatgttgcagtgaagagtgtcaaattctcatgtcaagtttttcttattttggcactggttatacttccatttagaatttggaattgctattactccttgaccgtgtaaag
species | Glycine max |
transcript | GLYMA20G34780.2 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAAT AACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACAACTGTTGCTTCTGEST: gi|22930358|gb|BU547497.1|BU547497
genomic: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAATgtatcctctt ... ccgtgtaaagAACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACAACTGTTGCTTCTG
EST: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAAT AACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACAACTGTTGCTTCTGCEST: gi|192331631|gb|FK023449.1|FK023449
genomic: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAATgtatcctctt ... ccgtgtaaagAACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACAACTGTTGCTTCTGC
EST: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCA-T AACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACA-CTGTTGCTTCTGC
genomic: GATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAATgtatcctctt ... ccgtgtaaagAACTGCAGCTTCTGTGAGATCAATCAAGTCCAGGACAACTGTTGCTTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAATCTCCTGTAGTTTCAAGAATGCCATTGCAACCTGATAACAAGAAGCATCCTGATGATGATGATTCTTGTTCAGTTGCTTCAATgtatcctcttaaaaatgttgcagtgaagagtgtcaaattctcatgtcaagtttttcttattttggcactggttatacttccatttagaatttggaattgctattactccttgaccgtgtaaag
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC