Sequence
atgc intronic sequence ATGC exonic sequence...tctttgtcattgtttctggtataaataagacacctgttcatgtttaaggtgtgaagaaaaagaatggaacttatatatatttgttttcttgttcctgcagTAGTGCTGTAGCAGATTGTTGCTCTTCCTCTTTAGGGGTCTATGATCAAGATAGGGAGTGTGGGTGTGGCCGT
Basic information
species | Glycine max |
transcript | GLYMA20G34690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298179545|gb|HO028016.1|HO028016EST: GACTCACTCTTGTTTTCGCTTCGCTACTCATCATCCTAAG TAGTGCTGTAGCAGATTGTTGCTCTTCCTCTTTAGGGGTCTATGATCAAGA
genomic: GACTCACTCTTGTTTTCGCTTCGCTACTCATCATCCTAAGgtaatgcctc ... gttcctgcagTAGTGCTGTAGCAGATTGTTGCTCTTCCTCTTTAGGGGTCTATGATCAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggtgtgaagaaaaagaatggaacttatatatatttgttttcttgttcctgcagTAGTGCTGTAGCAGATTGTTGCTCTTCCTCTTTAGGGGTCTATGATCAAGATAGGGAGTGTGGGTGTGGCCGT
tttgttttcttgttcc CT-rich tract
aacttatatatatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctttgtcattgtttctggtataaataagacacctgttcatgtttaaggtgtgaagaaaaagaatggaacttatatatatttgttttcttgttcctgcagTAGTGCTGTAGCAGATTGTTGCTCTTCCTCTTTAGGGGTCTATGATCAAGATAGGGAGTGTGGGTGTGGCCGT
- - - - - -gtttctg
- - - - - - - - - - ataaataa
- - - - - - - - - - - - - - - cacctgt
- - - - - - - - - - - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - aggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa