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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcctgttgtaatgtttattatttttaagttttagtatttgagacttgcttactatgctttactatctttgccaagctaacacacttctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTACTCATGATGAGTGTTAAAAATAATACTCAG

Basic information

species Glycine max
transcript GLYMA20G34630.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207716872|gb|GD698570.1|GD698570
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
EST: gi|58021732|gb|CX708473.1|CX708473
EST:     AATGAGCCGGCCAATGGAGGAAGAT                         GCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA
genomic: AATGAGCCGGCCAATGGAGGAAGATgtaagttctg ... ctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttgcttactatgctttactatctttgccaagctaacacacttctttttacagGCTGCGGGTAAAAATGAGGAAGAGGAGTTCAACACCGGACCACTATCTGTACTCATGATGAGTGTTAAAAATAATACTCAG
                                agctaac  putative branch site (score: 2)
                                        cacttcttttt  CT-rich tract
                                           ttcttttta  TA-rich tract