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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggacaatgcatgctgctacaattctataccatagggaagtaatcgaaacttgatttgtctaacctcaaaatatttcagGGTTAGTGTGACTCTTAATATGTACTTTGCAAGCCTGAACTACACAAATCCGACCTTTGTTGCTTCCATGGTCAACACCATAGCTTCCCTTACCTTCATC

Basic information

species Glycine max
transcript GLYMA20G34510.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404148|gb|EV273958.1|EV273958
EST:     AAGCTGACATTTGCTCTTTTCATGGAAATTTTTGTGCTTTCTCTGTTAGG                         GGTTAGTGTGACTCTTAATATGTACTTTGCAAGCCTGAACTACACAAATCC
genomic: AAGCTGACATTTGCTCTTTTCATGGAAATTTTTGTGCTTTCTCTGTTAGGgtaaggacaa ... aatatttcagGGTTAGTGTGACTCTTAATATGTACTTTGCAAGCCTGAACTACACAAATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctataccatagggaagtaatcgaaacttgatttgtctaacctcaaaatatttcagGGTTAGTGTGACTCTTAATATGTACTTTGCAAGCCTGAACTACACAAATCCGACCTTTGTTGCTTCCATGGTCAACACCATAGCTTCCCTTACCTTCATC
                                 gtctaac  putative branch site (score: 2)
                                         tcaaaatattt  TA-rich tract