Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatatgatgatctgcaaatgtacttgtgttgttcatcactagcttggttggatgctgaatgtggaataacttgctactgagtgctccttttgtattacagTTACTTGATAGCTTCAATGGGTTTACTAGTCATTTGGAGTTTTGTGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAAAAGGTCCTCCACAACGCT

Basic information

species Glycine max
transcript GLYMA20G34500.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34500.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0049g00440.t01 (Vitis vinifera), 3'ss of exon 2
gatatgatgatctgcaaatgtacttgtgttgttcatcactagcttggttggatgctgaatgtggaataacttgctactgagtgctccttttgtattacagTTACTTGATAGCTTCAATGGGTTTACTAGTCATTTGGAGTTTTGTGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAAAAGGTCCTCCACAACGCT
 || |  ||   |     |||  || | |  |     | |  | |   | ||     ||  ||  | | ||| |        ||    ||     | ||| |||||||| || ||||||||||| | |||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||
aattttttgcattttgtttgtggttctatcttcttgaaattccgtttcttgacttacaagatgttagaccttacgctctcaagccatgttgcccctgcagCTACTTGATCGCATCAATGGGTTTGCAAGTCATTTGGAGCTTTGGGCTTGCTTTCTTGGATGCATATGCCTTGGTGAAAAAGAAGGTCCTCCACAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttggatgctgaatgtggaataacttgctactgagtgctccttttgtattacagTTACTTGATAGCTTCAATGGGTTTACTAGTCATTTGGAGTTTTGTGCTTGCTTTATTGGATGCATATGCCTTGGTGAAAAAAAAGGTCCTCCACAACGCT
                  gaataac  putative branch site (score: 2)
                                    tgctcctttt  putative PPT
                                          ttttgtatta  TA-rich tract