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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatactgttgttttaattagtaatgactgtattctgtgtttttttttcttgccttaatttggttctaaatttctatctattatgttttgttatctgcagTTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTTTCCTCAAAGCATGACTCTTCTTCTTCGGTTTCAATTACGACCGTCCATTTCCATAG

Basic information

species Glycine max
transcript GLYMA20G34420.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322817|gb|GR839838.1|GR839838
EST:     ATAGGGTTGGGGGCAGATTGAGCTTCAGCATTTGCAAGAGGGTAGTCCAG                         TTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTTTCCTCAA
genomic: ATAGGGTTGGGGGCAGATTGAGCTTCAGCATTTGCAAGAGGGTAGTCCAGgtgagtttta ... ttatctgcagTTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTTTCCTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgccttaatttggttctaaatttctatctattatgttttgttatctgcagTTGATGCAGGGGAACATATGGTTAGTACCTTGTAATCATGGTTTTCCTCAAAGCATGACTCTTCTTCTTCGGTTTCAATTACGACCGTCCATTTCCATAG
                  ttctaaa  putative branch site (score: 2)
                                        ttttgtt  putative PPT
                     taaatttctatctatt  TA-rich tract