Sequence
atgc intronic sequence ATGC exonic sequence...ttgcatttcaatatattaccacattctctgtgctccgcttcgcctgtgtgcgtgtctagagtttccttaacaattcataattcaattccgtaatgtatagTTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAATTTATTGTTGTGTGTTCAAAATGGGTGAAATTTGGTGGTCCCTTTTGGGG
Basic information
species | Glycine max |
transcript | GLYMA20G34290.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207718621|gb|GD700515.1|GD700515EST: AAGCCATCGAAGCACCGCGACGCTGTCTCTCCTGCTATTCTCCGCCGGCG TTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAAT
genomic: AAGCCATCGAAGCACCGCGACGCTGTCTCTCCTGCTATTCTCCGCCGGCGgtaaatgcaa ... taatgtatagTTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtgcgtgtctagagtttccttaacaattcataattcaattccgtaatgtatagTTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAATTTATTGTTGTGTGTTCAAAATGGGTGAAATTTGGTGGTCCCTTTTGGGG
ccttaac putative branch site (score: 3)
ttaacaattcataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgcatttcaatatattaccacattctctgtgctccgcttcgcctgtgtgcgtgtctagagtttccttaacaattcataattcaattccgtaatgtatagTTGTGAGCATGCAGCATGTGAATTATAGGAAGAGGAGGCGAATTTGTTAATTTATTGTTGTGTGTTCAAAATGGGTGAAATTTGGTGGTCCCTTTTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- gcatttc
- - - - - - - - - - -cattctc
- - - - - - - - - - - - - - - - - ccgcttc
- - - - - - - - - - - - - - - - - - - - - cctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - -gcgtgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caattcc