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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttccagggttcattcatttattaaacacttaacaggacgctttttattcaactatttgttgatatagttttttaaccctgcagGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCT

Basic information

species Glycine max
transcript GLYMA20G34250.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34250.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv05s0049g01830.t01 (Vitis vinifera), 3'ss of exon 4
gtaagatttccagggttcatt-catttattaaacacttaacaggac--gctttttattcaactatttgttgatatagttttttaaccctgcagGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCT
||||||| |    | |  ||| | | ||| | | ||| ||   | |  ||     ||| || |  || |   | | || ||||  ||   ||| | | ||||||||| ||||||||  |||||||||||||||||||| | || |||||||||||  ||||||||||||||||||  | | ||||||| ||||
gtaagatct----gatctattacctgtatgagatactaaatgtggcatgcagcccatt-aatttcttttcccttttgtattttc-ccaaacagATGGGTATGAAAGAAGAAGATGAACTGGTTGATTCCTCAGATATCCTGGCACATATCAGTGGTGTGAACTCCTTCAAATGCACTTTTCCCATCCAATCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaacaggacgctttttattcaactatttgttgatatagttttttaaccctgcagGTAGTTATGAAAGATGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGGCTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCT
                                         ttttaac  putative branch site (score: 2)
                                       tttttta  CT-rich tract
            tttttattcaactatt  TA-rich tract