Sequence
atgc intronic sequence ATGC exonic sequenceACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGgtaggtgttatgttatacatggctatatggaatggatggctcatgttttttaatattagtcaaattgtacttttatttctatattttggttctgtcgttttactataataatatcattttcattgcacag
Basic information
species | Glycine max |
transcript | GLYMA20G34230.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G34230.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G04520.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGA---AGAAGAAACGTGATGgtaggtgttatgtta-tacatggctatatggaatggatggctcatgttttttaatattagt-caaattgtacttttat-ttctatat----tttggttctgtcgtttt-actataataatatcattttcattgcacag-----------------------------------------
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---GGGAAGACGGTGGCAATAATAGTAGGAGGAGCAGCTGGTGTTGGCTTTCTTGTCATTTGCTTGCTTTTTGCCAAAAACTTGATGAGGAAGAAACATGACGgtaccattttcttcactatatagtttacatacataagcatctagtatttgattacatacatgtaaggtacatgcatagattatacaaaacacatgcacatgtgatgtagaatatattaaagggaagattatttggaattgtcataacaatgatatctttttgggatctttttttggcag
upper sequence: GLYMA20G34230.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv05s0049g01860.t01 (Vitis vinifera), 5'ss of exon 2
ACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGgtaggtgttatgttatacatggctatatggaatggatggctcatgttttttaatattagtcaaattgtacttttatttctatattttgg--ttctgtcgttttactataataatatcattttcattgcacag
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ACAGGGAAGACAGTTGCTATTATAGTAGGAGGGGCAGCAGCATTAGGGTTTGTGGTGATCTGTATGTTGTTTGCTAGAAATTTGATGAAGAAACACGAAGgtatgtaa-ggattgaaagtgagattgctcattattttccactctatcttctttatttatctggctgtctaatgggggttatgattggaatttgtgtcttttttctgcag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208140325|gb|GD939049.1|GD939049EST: TGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATG GTTATTGACAGTGGAAGATGGTTGATTGAGGAGGCATAATTCTTCATGCAG
genomic: TGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGgtaggtgtta ... cattgcacagATTATTGACAGTGGAAGATGGTTGATTGAGGAGGCATAATTCTTCATGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGGGAAGACAGTGGCTATAATAGTAGGAGGGGCAGCTGGAGTGGCGTTTTTGGTCATATGCTTGATGTTTGCTAGGAGTTTGAAGAAGAAACGTGATGgtaggtgttatgttatacatggctatatggaatggatggctcatgttttttaatattagtcaaattgtacttttatttctatattttggttctgtcgttttactataataatatcattttcattgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA