Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacttctaacttcttttttctcatacccttttgttcaaacattctgtttcacctcaaaagaaacctttttgttttgttcagGTTGGGACTTACTTTGTGGGGCAGTACTACCATGTTCTTGAGACCAACCCCGAGTTGGTGTATCAGTTCTATTCTGATGCCAGCACAATGGTACGCATCG

Basic information

species Glycine max
transcript GLYMA20G34200.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34200.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0049g01940.t01 (Vitis vinifera), 3'ss of exon 1
gttcacttctaacttcttttttctcatacccttttgttcaaacattctgtttcacctcaaaagaaacctttttgttttg----ttcagGTTGGGACTTACTTTGTGGGGCAGTACTACCATGTTCTTGAGACCAACCCCGAGTTGGTGTATCAGTTCTATTCTGATGCCAGCACAATGGTACGCATCG
  | | ||||   || |||||||   |  |  | | |       |||| |||    |  |  ||||  ||   ||| ||    ||||||||||| | ||||| ||||||||||||||||| |||||| ||    | || || || ||  | |||||||| ||||||||||||||  || | ||| | |
-gtaatttctgtttttttttttcctttctctctctctct---ttttctttttttttttgactgaaattttggggttatggtgtttcagGTTGGGGCATACTTCGTGGGGCAGTACTACCAGGTTCTTCAGCAACAGCCAGACTTTGTTCACCAGTTCTACTCTGATGCCAGCACTGTGCTTCGCGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208310544|gb|GE105960.1|GE105960
EST:     GGTTTTCTGCAATGGCCACGCACTTTCCATTTCCCCTCTCCGCTGCTCAG                         GTTGGGACTTACTTTGTGGGGCAGTACTACCATGTTCTTGAGACCAACCCC
genomic: GGTTTTCTGCAATGGCCACGCACTTTCCATTTCCCCTCTCCGCTGCTCAGgttcacttct ... ttttgttcagGTTGGGACTTACTTTGTGGGGCAGTACTACCATGTTCTTGAGACCAACCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttgttcaaacattctgtttcacctcaaaagaaacctttttgttttgttcagGTTGGGACTTACTTTGTGGGGCAGTACTACCATGTTCTTGAGACCAACCCCGAGTTGGTGTATCAGTTCTATTCTGATGCCAGCACAATGGTACGCATCG
                                     cctttttgttttgttc  CT-rich tract
                                       tttttgtttt  TA-rich tract