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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcatacctggtaggcttaaataacatttttttctttcttccaaaacttctatcttatttctaattaaaaaactaaaaacaagagtttctgcatatcagGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCT

Basic information

species Glycine max
transcript GLYMA20G34110.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34110.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv05s0077g00060.t01 (Vitis vinifera), 3'ss of exon 7
--tatcatacctggtaggcttaaataacatttttttctttcttccaaaacttctatcttatttctaattaaaaaactaaaaacaag--agtttctgcatatcagGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCT
  ||||| || |  ||   ||   |     | |  ||||   |   |   || |    | ||| || | ||| ||  || ||  |   | || || | |  ||||||||||| |||||||||||| ||||| ||||||||| | |||||| | |||| || ||| || |||||||| |  |||||||||||||||||| |||| 
agtatca-actttttaa--tttgtttttgatgtggtcttctatttgagctttgtggtctgttttta-taaaataatcaagaattaaccaattgcttccttccagGCGAGAGAGAGTTTCATTGAACCCAGTAAAGTCAAGACTATGCAAGATGCCTGGTTTAGGCAAGGATTCCCCTAAGATTGGTTATATCAAACTAGCATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttctatcttatttctaattaaaaaactaaaaacaagagtttctgcatatcagGCGAGAGAAAGTTTCATTGAATCCAGTGAAGTCAAGATTGTGCAAGCTACCTGCTTCAGGAAATGATTCCCCGACAATTGGTTATATCAAACTAACATCT
                          aactaaa  putative branch site (score: 2)
                                         tttctgc  putative PPT
      tatcttatttctaatt  TA-rich tract