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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttattgctttgaatttatttagttctttcttgctaaactgcaacgtctgttgcatccccacaaactagttaatcacttgagttcaattgcagGTACAACTTTGATCCTGTGAATGAGAAGCCGCTCTCAGGGCGCTATGAATGGGAAAAGTTGAAACCCTAGAAGGGTAATGTAGTGTTCCATCAAGACATC

Basic information

species Glycine max
transcript GLYMA20G34090.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34090.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0029g00040.t01 (Vitis vinifera), 3'ss of exon 2
gtatgctt--tattgctttgaatttatttagttctttcttgctaaactgca-acgtctgttgcatccccacaaactagttaatcacttgagttcaattgcagGTACAACTTTGATCCTGTGAATGAGAAGCCGCTCTCAGGGCGCTATGAATGGGAAAAGTTGAAACCCTAGAAGGGTAATGTAGTGTTCCATCAAGACATC---
||||| |   ||||   |   ||   |||  |  | |     || | | |     | ||    |      |   ||| |    |   |   ||   ||||||||| |||||||| || |||||||| ||||||||||| || || | ||||||||  || ||||| |  ||| ||   ||  ||| ||||||| |  || |    
gtatgttaagtattttctcttatccttttgctagtcttgacttacattacctgaatttgggaaaatatttctttctaatg---cgggtttctttttttgcagGTATAACTTTGACCCCGTGAATGATAAGCCGCTCTCTGGACGATTTGAATGGGTGAAATTGAATCGTTAGCAG---AAGTTAGCGTTCCATTAGAACCTTATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299766|gb|FG993316.1|FG993316
EST:     GAATTCTTTGCTGAAATTGAAGAGGCTCAGCNNNNNNNNTTCATTGAGAA                         GTACAACTTTGATCCTGTGAATGAGAAGCCGCTCTCAGGGCGCTATGAATG
genomic: GAATTCTTTGCTGAAATTGAAGAGGCTCAGCAAAAAAAATTCATTGAGAAgtatgcttta ... tcaattgcagGTACAACTTTGATCCTGTGAATGAGAAGCCGCTCTCAGGGCGCTATGAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaacgtctgttgcatccccacaaactagttaatcacttgagttcaattgcagGTACAACTTTGATCCTGTGAATGAGAAGCCGCTCTCAGGGCGCTATGAATGGGAAAAGTTGAAACCCTAGAAGGGTAATGTAGTGTTCCATCAAGACATC
                             agttaat  putative branch site (score: 4)
                            tagttaat  TA-rich tract