1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctaggaatggttttattatatctctaattcaacaaagaggcaaaatattcaaactgtaaaatacttgaatttgtatgttcatcattttgtgaattatagGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGTCAGCAAAAAGATGTGAAAAGTGATAAGGGAACAGAAGTCTCCCACCGGG
species | Glycine max |
transcript | GLYMA20G34000.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACACCGGCAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAG GAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGTEST: gi|14205714|gb|BG839392.1|BG839392
genomic: ACACCGGCAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGgtatgctatt ... tgaattatagGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGT
EST: ACACCGGCAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAG GAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGT
genomic: ACACCGGCAGTGCGACTCAAGACAAACAATCTACTACTGTTTTGCCAAAGgtatgctatt ... tgaattatagGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGT
atattcaaactgtaaaatacttgaatttgtatgttcatcattttgtgaattatagGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGTCAGCAAAAAGATGTGAAAAGTGATAAGGGAACAGAAGTCTCCCACCGGG
taaaatacttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaggaatggttttattatatctctaattcaacaaagaggcaaaatattcaaactgtaaaatacttgaatttgtatgttcatcattttgtgaattatagGAAGTTGAAAATGGAGCTGCAGTTGCTTCAGTGGCAGAAAATTCAGAGGGTCAGCAAAAAGATGTGAAAAGTGATAAGGGAACAGAAGTCTCCCACCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - -tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt