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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaaataaggacaattttatattaatttttctcccaattatttacttcctttatttcttgtgtaacatataaaaccaactgaagttaagaattccgcagGAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGAGACTTATTTCTGAGATACGGAGTGCTTTAAATGTTCATAATGATCAAGT

Basic information

species Glycine max
transcript GLYMA20G33710.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151412797|gb|EV282609.1|EV282609
EST:     TAAACCAAGGAATGAGGTTAATGTGCAGGGATACACCTTCAGAATTGATG                         GAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGA
genomic: TAAACCAAGGAATGAGGTTAATGTGCAGGGATACACCTTCAGAATTGATGgtaagaacaa ... aattccgcagGAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGA
EST: gi|151410453|gb|EV280268.1|EV280268
EST:     TAAACCAAGGAATGAGGTTAATGTGCAGGGATACACCTTCAGAATTGATG                         GAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGA
genomic: TAAACCAAGGAATGAGGTTAATGTGCAGGGATACACCTTCAGAATTGATGgtaagaacaa ... aattccgcagGAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctttatttcttgtgtaacatataaaaccaactgaagttaagaattccgcagGAAACACAACATTTGTGATGAACTATGGACGTTGGTCAGAAAAGCGTAAGAGACTTATTTCTGAGATACGGAGTGCTTTAAATGTTCATAATGATCAAGT
               gtgtaac  putative branch site (score: 3)
                tgtaacatataaaa  TA-rich tract