Sequence
atgc intronic sequence ATGC exonic sequenceAACGCCGCAAGAACGCGCTGAGGTAGAAAGGCTACGCCATCAATTCACAAAAAACCGATTTTCCATCAAACAAAGCGCGGATCTCTTGATGAGAATGCAGgtacctacctacacctctctctctctctctctatatatataggaactaatttactccaatattgttattcaaaatataattcttgtttataaatttcata...
Basic information
species | Glycine max |
transcript | GLYMA20G33450.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G33450.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0065g00050.t01 (Vitis vinifera), 5'ss of exon 1
AACGCCGCAAGAACGCGCTGAGGTAGAAAGGCTACGCCATCAATTCACAAAAAACCGATTTTCCATCAAACAAAGCGCGGATCTCTTGATGAGAATGCAGgtacctacctacacctctctctctctctctctatatatataggaactaatttactccaata-ttgttattcaaaatataattcttgtttataaatttcata
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ATCTCCACAAGAACGAGCTGAAGTTGAAAGGGTTCGCGAGGAGTTCAAGAAGAACCGCTTCCAATTTAAACAAAGCGCTGATCTTTTGATGCGAATGCAGgtacc-atttaaactaatctctctcctctctcttatggattgaaatgtacaaaattagattcttgttttgaaaaatgtttcatcttcccattgctttattt
upper sequence: GLYMA20G33450.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0065g00030.t01 (Vitis vinifera), 5'ss of exon 2
AACGCCGCAAGAACGCGCTGAGGTAGAAAGGCTACGCCATCAATTCACAAAAAACCGATTTTCCATCAAACAAAGCGCGGATCTCTTGATGAGAATGCAGgtacctacctacacctctctctctctctctctatatatataggaactaatttactccaata-ttgttattcaaaatataattcttgtttataaatttcata--
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ATCTTCACAAGAACGAGCTGAAGTTGAAAGGGTTCGCGAGGAGTTCAAGAAGAACCGCTTCCAATTTAAACAAAGCGCTGATCTTTTGATGCGAATGCAGgtacc-atttaaactaatctctct-tctctct-tatggattgaaatgtacaaaattagattcttgttttgaaaaatgtttcatcttcccattgctttatttaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192322388|gb|FK014869.1|FK014869EST: AAAACCGATTTTCCATCAAACAAAGCGCGGACCTCTTGATGAGAATGCAG CTCACAAAGGAGAACCAGTGTGGTCCCATTCCACCAGCAGTGAAAGTGAGA
genomic: AAAACCGATTTTCCATCAAACAAAGCGCGGATCTCTTGATGAGAATGCAGgtacctacct ... gtttaaatagCTCACAAAGGAGAACCAGTGTGGTCCCATTCCACCAGCAGTGAAAGTGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACGCCGCAAGAACGCGCTGAGGTAGAAAGGCTACGCCATCAATTCACAAAAAACCGATTTTCCATCAAACAAAGCGCGGATCTCTTGATGAGAATGCAGgtacctacctacacctctctctctctctctctatatatataggaactaatttactccaatattgttattcaaaatataattcttgtttataaatttcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc