Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTATGGCTCTTGCACAGCAACATAGATGTTTGTTCCTAGAGTGTAGTGCTAAAACTAGAGAAAATGTTCAGCAATGCTTTAATGATCTCACATTAAAGgtatatatgatcttattacatttctggtgctctagttgcttccttgtactctgctttagcaatattccatttgttatattgtgtgtataataaaagcttg...

Basic information

species Glycine max
transcript GLYMA20G33440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33440.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g05190.t01 (Vitis vinifera), 5'ss of exon 5
GGGTATGGCTCTTGCACAGCAACATAGATGTTTGTTCCTAGAGTGTAGTGCTAAAACTAGAGAAAATGTTCAGCAATGCTTTAATGATCTCACATTAAAGgtatatatgatcttattacatttctggtgctctagttgcttccttgta-ctctgctttagcaatattccatttgttatattgtgtgtataataaaagcttg--
 || ||| | || |||||| | |||| |||||  || || || || ||||| ||||||||||| ||||| |||||||||||||| || ||||| |||||||||| |    ||| |  | |       | |   |  |     | || | ||  | | |   | || ||  || |    | ||  | |  |      | |||  
AGGAATGTCCCTCGCACAGGAGCATAAATGTTCATTTCTTGAATGCAGTGCGAAAACTAGAGAGAATGTGCAGCAATGCTTTAAAGAGCTCACCTTAAAGgtatct---ctctgaaaaaacaagcttttcctcatctatcatcctgaatctagggtattctagtagtctgttaggctcagtgattcttgaggttttgtttgga