Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgtaactctctttcatatgctcattttaactgttttttattttacttaaagtaaaatggagaattttcag

Basic information

species Glycine max
transcript GLYMA20G33370.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv13s0019g05260.t01 (Vitis vinifera), 5'ss of exon 5
TGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAAACCAAGTCATTCAATTTGTTGCAGGCCAGgta-actctctttcatatgctcatt-ttaactgttttttattttacttaaagtaaaatggagaattttcag
||||||||||| | | || |||||||||||||||||||| |||||||||| ||| ||||||||| |  || |  |||||||||||||||| || ||||||||    | |   || |   ||||   ||  |  |     |  ||  || || |   |  |    |||||||
TGAAGATGAAGCAGCAGGGCAGATACCAATGGCATATGTAGTGAGAGCAGGTGGATCTGAACTCACCCAACAAGAAGTCATTCAATTTGTAGCTGGCCAGgtttgttttagctccttccctcaccctttcccataagaaaacttctttcaaattttaatgtccgttttcag