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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGTGCAATAAATGAAATACAAAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGgtaatctctatgatgttgatttgattagttattggaagaacagatgtcttacatgcttctgaacttaatttgctacctgattag

Basic information

species Glycine max
transcript GLYMA20G33330.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33330.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0019g05360.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTTCCTGGAACTACTGATAGGATTATCATGGTATCTGGTGCAATAAATGAAATACAAAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGgtaatctctatgatgttgatttgatt-agttattggaagaacagatgtcttacatgcttctgaacttaatttgctacctgattag-----------------
||| |||||||||||| |||| ||||| || ||| ||||||| |||| ||||||||||   |  ||  | |||||||| ||  |||| ||  | |||||||| ||||  |||||  || ||| | | |||||    |   |    |   || | |  |    |    ||     |   |  ||                   
ATTTTTTCCTGGAACTTCTGACAGGATCATTATGATATCTGGAGCAACAAATGAAATAATTAAAGCAATGGAACTTATTCTGGCTAAATTATTGAGTGAGgtgatcttcatgattctgcttttactcagtta--aaatttatcattaatttgcctattgaaaaggaaaaagaattgattagttgtattctggtcttgaggct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324276|gb|FK018252.1|FK018252
EST:     ATGAAATACAAAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAG                         CTTCATAGTGAGGATGACAATGATGCTGAGCCAAAGACAAAAGTGAGACTC
genomic: ATGAAATACAAAGGGCTGTAGAACTTATCCTTTCTAAGTTGCTCAGTGAGgtaatctcta ... acctgattagCTTCATAGTGAGGATGACAATGATGCTGAGCCAAAGACAAAAGTGAGACTC