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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgtaactaactcaccatccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag

Basic information

species Glycine max
transcript GLYMA20G33270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g50340.1 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgtaactaactcaccatccg--ttaccctagatctgcatataatttccccagatccga-acctcgctaaccctaatctaatctcacccgcag---
|||||||||||||| |||||| |||||   ||||||||||||||||||||||||||||||||||| ||||||  | ||||||| ||||||||||||||||||||      | |  ||| |   |    |  | |  |    |   ||  |||     | |  |     ||||    |      |    |    ||  |   
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGgtaaacatcgattc-ctccctgcctagatctcgcccgcctcgagcattttttttttcgctgtggtggttcgccgctcgcggggtcgggtgtggcgtcgacg

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g50350.1 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcg--taactaactcaccatccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatc-taatctcacccgcag---
|||||||||||||| |||||| |||||   ||||||||||||||||||||||||||||||||||| ||||||  | ||||||| |||||||||||||||||| | | |     |||  || |  ||| |  |       | |   ||    | |   |       | |   |  | |  ||| |   ||    || ||   
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACGCAGCCGCTCTTCGTCTCCGGAGgtgagtagacccgctagatctctctccctcgcggggcggcgg-gcatgggcttcgtggcgtgttgcttgtttcgctcggatcctgccctggatcggaggac

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os09g04110.2 (Oryza sativa), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcg-taactaactcacc----atccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag
|||||||||||||| |||||| |||||   ||||||||||||||||||||||||||||||||||| ||||||  | | ||||| |||||||||||||||||| | ||  | | | | ||  |    |||     |  | | | |||   |   ||  ||     ||    | | |    | |      | |     ||  
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCACTTCCACGCCACCCAGCCGCTCTTCGTCTCCGGAGgtcagtcaatcattcattcctcctagatctcgcccatttgctgtgctcttttatttgcctttcgcgcgtttggttggatccacgtcggtattgagggcgt

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G010054_T01 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgtaactaactcaccatccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatct-cacccgcag--------
|||||||||||||| |||||| |||||   ||||||||||||||||| || || ||||||||||| ||||||  | | ||||| |||||||||||||||||||| | |  |  | |   |  ||     |    | |  ||   |    |   ||| ||   |  || ||  | |  ||   |  |   ||||||         
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCGTCCACTTCCACGCCACACAGCCGCTCTTCGTCTCCGGAGgtaatttgctag-atccttctgtctcgcccgtctggtgcgctcttcgcgtgttcagctc---atttctctcgcgcggattggaggtgttcccgcaagttacgtg

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G149406_T01 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcg-taactaactcaccatccgttaccctagatctgcatataatttccccag---atccgaacctcgctaaccctaatctaatctcacccgcag--
|||||||||||||| |||||| |||||   ||||||||||||||||| || || ||||||||||| ||||||  | | ||||| |||||||||||||||||||| | | ||  |   ||  | |      |    | |  ||   |    |    ||   ||    | |||||  |    |   || || | |  |     
GACTACCGCATGGGCACCCTCCTCGACCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCGTCCACTTCCACGCCACTCAGCCTCTCTTCGTCTCCGGAGgtaatttgctagatccttcctcgtgtcgcccgtctggtgcgcgcttcgcatgtttagctcatttatatctcgcggataggagg-tattcccgcgagttacg

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: AC155622.2_FGT004 (Zea mays), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgta---actcgtaactaactcac-catccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag--
|||||||||||||| |||||| || ||   ||||||||||||||||| |||||| | |||||||| || |||  | ||||||| |||||||| ||||||||||      | |  ||    ||| |   || |   |  ||||  | |  |  |  ||  ||||    | ||||    ||| |  | | ||    ||  |  
GACTACCGCATGGGCACCCTCCTCAACCGCTTCGACGAGCACGACGGGCCCGTCAGGGGCGTCCACTTTCACGCCACGCAGCCGCTCTTCGTGTCCGGAGgtactattccttgtcttctccactcgggcgctctaccggatcgtcct-cacctcacctggatcgtcccttcgcctcacctcacttcacctggatcgtcggt

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G62020.1 (Arabidopsis thaliana), 5'ss of exon 2
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgtaact--aactcaccatccgttaccctagatctgc---atataatttccccagatccgaacc-tcgc-taaccctaat-ctaatctcacc--cgcag
|| || || ||||| ||  | ||||| |  |||||||| ||||| || || || || || || ||||||||| | || ||||| |||||||||||||||||||  |  ||| |   | |||   |  || |      ||  ||   | | |||    | | |   ||    | || | ||  | ||  | ||||       ||||
GATTATCGTATGGGTACTTTGATCGATAGATTCGACGAACACGAAGGACCTGTTCGTGGTGTTCATTTCCACAATTCTCAGCCTCTCTTCGTCTCCGGAGgtatat-ataattcggaatcattgttagtgaaatcgtataagctcaaaagaatggatctatacatgatttgttgcattacaatgatgttgatcttgatattgcag

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ32142 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaa----ctcgtaactaactcaccatccgtt--accctagatctg--catataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag
|| ||||| |||||| | || || ||    |||||||||||||| || || || ||||||||||| ||||||   || ||||| || |||||||| ||||||||      | |   |  ||||||   || |  ||  |   |  |  |     |||||      | |     |||||      |   |    ||      ||
GATTACCGGATGGGATCGCTGATAGATCGCTTCGACGAGCACGATGGGCCGGTTCGCGGCGTCCACTTCCACAGATCTCAGCCACTTTTCGTCTCGGGAGgtaagatttccttgctttcctcaccgatcgatcgacattttgttcgatcgaccgatttctttgctttcctgagtcgctgctgaaaggatcccttctttttaag

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ08647 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgt-aactaactcaccatccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag
|| ||||| |||||| | ||||| ||    |||||||||||||||||||| || |||||||| |||||||||  ||| ||||| || |||||||| ||||||||  |   ||| | |   |    | ||   | | || |  ||  |  ||  ||||                                       
GATTACCGGATGGGATCTCTCATAGATCGCTTCGACGAGCACGACGGCCCGGTTCGCGGCGTTCATTTCCACAGCTCTCAGCCTCTTTTCGTCTCGGGAGgtaaaccacgaaccagcattcgcgtctttgatcaatatttcgattgatcttgtccag---------------------------------------

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ16853 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaa----ctcgtaactaactcaccatccgtt--accctagatctg--catataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag
|| ||||| |||||| | || || ||    |||||||||||||| || || || ||||||||||| ||||||   || ||||| || |||||||| ||||||||      | |   |  ||||||   || |  ||  |   |  |  |     |||||      | |     |||||      |   |    ||      ||
GATTACCGGATGGGATCGCTGATAGATCGCTTCGACGAGCACGATGGGCCGGTTCGCGGCGTCCACTTCCACAGATCTCAGCCTCTTTTCGTCTCGGGAGgtaagatttccttgctttcctcaccgatcgatcgacattttgttcgatcgaccgatttctttgctttcctgagtcgctgctgaaaggatcccttctttttaag

upper sequence: GLYMA20G33270.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ37162 (Selaginella moellendorffii), 5'ss of exon 1
GACTACCGCATGGGAACCCTCATCGACAAGTTCGACGAGCACGACGGCCCCGTCCGCGGCGTCCATTTCCACCACTCGCAGCCCCTCTTCGTCTCCGGAGgtaactcgtaactaactcaccatccgttaccctagatctgcatataatttccccagatccgaacctcgctaaccctaatctaatctcacccgcag
|| ||||| |||||| | ||||| ||    ||||||||||||||||| || || |||||| |||||||||||  ||| ||||| || |||||||| ||||||||  |  ||      || ||| ||    | | ||||   || |   ||   |   ||                                    
GATTACCGGATGGGATCTCTCATAGATCGCTTCGACGAGCACGACGGGCCGGTTCGCGGCATCCATTTCCACAGCTCTCAGCCTCTTTTCGTCTCGGGAGgtaagccacaa----accagcattcgc-gtctttgatcgatatttcgattgatcttgtctag---------------------------------