1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gataagacttgtggaactcaaataataaacaacagttagtaactttctgatagttatttgaggataaatttccttgtaacatttaaatgtattgttgcagACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAAGATGGTAGCCTGCTAAAAGCTGATAAACATAGAGTTGATGATCAACTTG
species | Glycine max |
transcript | GLYMA20G33210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATAACCTTCAAAACCATCAGCCAAAGCCAGATGATAGATGGAGTTAAG ACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAAEST: gi|298181680|gb|HO025855.1|HO025855
genomic: TCATAACCTTCAAAACCATCAGCCAAAGCCAGATGATAGATGGAGTTAAGgttatatttt ... attgttgcagACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAA
EST: TCATAACCTTCAAAACCATCAGCCAAAGCCAGATGATAGATGGAGTTAAG ACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAA
genomic: TCATAACCTTCAAAACCATCAGCCAAAGCCAGATGATAGATGGAGTTAAGgttatatttt ... attgttgcagACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAA
tctgatagttatttgaggataaatttccttgtaacatttaaatgtattgttgcagACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAAGATGGTAGCCTGCTAAAAGCTGATAAACATAGAGTTGATGATCAACTTG
ttgtaac putative branch site (score: 2)
taacatttaaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataagacttgtggaactcaaataataaacaacagttagtaactttctgatagttatttgaggataaatttccttgtaacatttaaatgtattgttgcagACAAGCACTCAAACCAATAACCTCAGCAAGACTTGTAAACCTTCAGAGGAAGATGGTAGCCTGCTAAAAGCTGATAAACATAGAGTTGATGATCAACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - acttgtg
- - - - - - - -actcaaa
- - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - ctttctg