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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctctctctcttacacgcacacacttgcatgcatcccttcttcattctaacgccttacaataatgtctattcaatttgacattttcaatatcctttcaaacctgcagAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCAT

Basic information

species Glycine max
transcript GLYMA20G33180.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33180.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 9
gttctctctctcttacacgcacacacttgcatgcatcccttcttcattctaacgccttacaataatgtctattcaatttgacattttcaatatcctttcaaacctgcagAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCAT
      |   | ||  | ||  | |         |||   |  ||  ||| | |  | ||| |  ||    || |   ||||| |||   |   |  ||   | || |||||||||||||||| || ||||  ||||||| ||  | || |||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||| |
-----gttggtatttgaggcggata---------atcttcttctccctctcatgtgtgacatt--tggtattttaggctgacaatttt--ttctccctctgtcatgtagAGTGGCAGATCTATATGCTGCTTCTGGGACTTTTCCTGGCCTCAGCTGTTGCATTTTACATATTCTTCGAGAACTCCGACTCATTTTGGAACTTCCCCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttacaataatgtctattcaatttgacattttcaatatcctttcaaacctgcagAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCAT
                                      tcctttca  CT-rich tract
                            attttcaatat  TA-rich tract