1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gatgtatattaatttgatatgaaatagttttggtttaatataaggttttggacatatgggatgcatcaataccgggattatttgtttcctttttctccagGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGG
species | Glycine max |
transcript | GLYMA20G33160.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTATCCATACATCTACAATCGGGAAGGCACAGAACTTCACTGTCTCAAG GAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTTCTCTT
genomic: GTATCCATACATCTACAATCGAGAAGGCACAGAACTTCACTGTCTCAAGgttggtgtat ... ttttctccagGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTT-CTCTT
ttttggacatatgggatgcatcaataccgggattatttgtttcctttttctccagGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGG
ttatttgtttcctttt CT-rich tract
attatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgtatattaatttgatatgaaatagttttggtttaatataaggttttggacatatgggatgcatcaataccgggattatttgtttcctttttctccagGAACATGGTCCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCTTGGCTTCAATCAACAAGTTTGGACAACTTCGTTATCAGGATGTTACAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatacc